BIODICA: A COMPUTATIONAL ENVIRONMENT FOR INDEPENDENT COMPONENT ANALYSIS OF OMICS DATA
| dc.contributor.author | Captier, Nicolas | |
| dc.contributor.author | Merlevede, Jane | |
| dc.contributor.author | Molkenov, Askhat | |
| dc.contributor.author | Seisenova, Ainur | |
| dc.contributor.author | Zhubanchaliyev, Altynbek | |
| dc.contributor.author | Nazarov, Petr V | |
| dc.contributor.author | Barillot, Emmanuel | |
| dc.contributor.author | Kairov, Ulykbek | |
| dc.contributor.author | Zinovyev, Andrei | |
| dc.date.accessioned | 2023-03-29T05:48:36Z | |
| dc.date.available | 2023-03-29T05:48:36Z | |
| dc.date.issued | 2022 | |
| dc.description.abstract | We developed BIODICA, an integrated computational environment for application of independent component analysis (ICA) to bulk and single-cell molecular profiles, interpretation of the results in terms of biological functions and correlation with metadata. The computational core is the novel Python package stabilized-ica which provides interface to several ICA algorithms, a stabilization procedure, meta-analysis and component interpretation tools. BIODICA is equipped with a user-friendly graphical user interface, allowing non-experienced users to perform the ICA-based omics data analysis. The results are provided in interactive ways, thus facilitating communication with biology experts. | en_US |
| dc.identifier.citation | Captier, N., Merlevede, J., Molkenov, A., Seisenova, A., Zhubanchaliyev, A., Nazarov, P. V., Barillot, E., Kairov, U., & Zinovyev, A. (2022). BIODICA: a computational environment for Independent Component Analysis of omics data. Bioinformatics, 38(10), 2963–2964. https://doi.org/10.1093/bioinformatics/btac204 | en_US |
| dc.identifier.uri | http://nur.nu.edu.kz/handle/123456789/6997 | |
| dc.language.iso | en | en_US |
| dc.publisher | Bioinformatics | en_US |
| dc.rights | Attribution-NonCommercial-ShareAlike 3.0 United States | * |
| dc.rights.uri | http://creativecommons.org/licenses/by-nc-sa/3.0/us/ | * |
| dc.subject | Type of access: Open Access | en_US |
| dc.subject | BIODICA | en_US |
| dc.subject | Independent Component Analysis | en_US |
| dc.title | BIODICA: A COMPUTATIONAL ENVIRONMENT FOR INDEPENDENT COMPONENT ANALYSIS OF OMICS DATA | en_US |
| dc.type | Article | en_US |
| workflow.import.source | science |
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